Function reference • singscore

All functions
`generateNull()`	Permutation test for the derived scores of each sample
`getPvals()`	Estimate the empirical p-values
`getStableGenes()`	Get a list of stably expressed genes
`multiScore()`	single-sample gene-set scoring method for multiple signatures
`plotDispersion()`	Plot the score v.s. despersion for all samples
`plotNull()`	Plot the empirically estimated null distribution and associated p-values
`plotRankDensity()`	Plot the densities of ranks for one sample
`plotScoreLandscape()`	Plot landscape of two gene signatures scores
`projectScoreLandscape()`	Project data on the landscape plot obtained from `plotScoreLandscape()`
`rankGenes()`	Rank genes by the gene expression intensities
`scoredf_ccle_epi`	Pre-computed scores of the CCLE dataset against an epithelial gene signature
`scoredf_ccle_mes`	Pre-computed scores of the CCLE dataset against a mesenchymal gene signature
`scoredf_tcga_epi`	Pre-computed scores of the TCGA breast cancer gene expression matrix against an epithelial signature
`scoredf_tcga_mes`	Pre-computed scores of the TCGA breast cancer gene expression matrix against a mesenchymal signature
`simpleScore()`	single-sample gene-set scoring method
`singscore`	singscore: A package for deriving gene-set scores at a single sample level
`tgfb_expr_10_se`	An example gene expression dataset
`tgfb_gs_dn`	Gene set of down-regulated genes for the TGFb-induced EMT gene signature
`tgfb_gs_up`	Gene set of up-regulated genes for the TGFb-induced EMT gene signature
`toy_expr_se`	A toy gene expression dataset of two samples
`toy_gs_dn`	A gene set object of down-regulated genes for the toy dataset
`toy_gs_up`	A gene set object of up-regulated genes for the toy dataset

Reference

All functions