Pre-computed scores of the TCGA breast cancer gene expression matrix against an epithelial signature

Source: R/singscore.R

This data.frame stores pre-computed scores of the TCGA dataset calculated using the simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al. Please refer to the vignettes for instructions on how to obtain the full datasets.

scoredf_tcga_epi

Format

An object of class data.frame with 1119 rows and 2 columns.

References

Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi Mori, Ruby Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD. “Epithelial-Mesenchymal Transition Spectrum Quantification and Its Efficacy in Deciphering Survival and Drug Responses of Cancer Patients.” EMBO Molecular Medicine 6 (10). Oxford, UK: BlackWell Publishing Ltd: 1279–93 doi:10.15252/emmm.201404208.

See also

scoredf_tcga_mes