Function reference
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calcMetrics() - Calculate metrics for probability matrix
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clustByHood() - Cluster the probability matrix with K-means
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findNearCells() - Find the k-th nearest cells for each cell
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mergeByGroup() - Merge probability matrix based on annotations
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mergeHoodSpe() - Merge probability matrix into SpatialExperiment object.
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plotColocal() - Plot heatmap for neighbourhood analysis
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plotHoodMat() - Plot probability matrix as a heatmap
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plotProbDist() - Plot probability distribution
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plotTissue() - Plot cells based on cell position on tissue.
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readHoodData() - Read cellular position and annotation data into a list object.
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scanHoods() - Scan cellular neighbourhoods.