All functions

bhuvad_theme()

Custom theme

characteriseGeneset()

Functionally characterise a list of genes

computeMsigNetwork()

Compute a network using computed gene set overlap

computeMsigOverlap()

Compute gene set overlap

computeMsigWordFreq()

Compute word frequencies for a single MSigDB collection

getMsigBlacklist()

Blacklist words for MSigDB gene set text mining

hgsc

The Hallmark collection from the MSigDB

plotGeneStats()

Plot gene statistics for clusters of gene sets

plotMsigNetwork()

Plot a gene set overlap network

plotMsigPPI()

Plot PPI network for gene-set clusters identified using vissE

plotMsigWordcloud()

Compute and plot word frequencies for multiple MSigDB collections