Function reference • vissE

All functions
`bhuvad_theme()`	Custom theme
`characteriseGeneset()`	Functionally characterise a list of genes
`computeMsigNetwork()`	Compute a network using computed gene set overlap
`computeMsigOverlap()`	Compute gene set overlap
`computeMsigWordFreq()`	Compute word frequencies for a single MSigDB collection
`findMsigClusters()`	Identify gene-set clusters from a gene-set overlap network
`getMsigBlacklist()`	Blacklist words for MSigDB gene set text mining
`hgsc`	The Hallmark collection from the MSigDB
`plotGeneStats()`	Plot gene statistics for clusters of gene sets
`plotMsigNetwork()`	Plot a gene set overlap network
`plotMsigPPI()`	Plot PPI network for gene-set clusters identified using vissE
`plotMsigWordcloud()`	Compute and plot word frequencies for multiple MSigDB collections

Reference