Compute a network using computed gene set overlap

Computes an igraph object using information on gene sets and gene sets computed using the computeMsigOverlap() function.

computeMsigNetwork(genesetOverlap, msigGsc)

Arguments

genesetOverlap

a data.frame, containing results of an overlap analysis computed using the computeMsigOverlap() function.

msigGsc

a GeneSetCollection object, containing gene sets used to compute overlap.

Value

an igraph object

Examples

data(hgsc)
ovlap <- computeMsigOverlap(hgsc)
ig <- computeMsigNetwork(ovlap, hgsc)