Changelog

Source: NEWS.md

mastR 0.99.0

• Added a NEWS.md file to track changes to the package.

mastR 0.99.1

• Fixed notes in R CMD check.

mastR 0.99.2

• Added non-emtpy return value to man files and update pca plot function.

mastR 0.99.3

• Added *.Rproj into .gitignore.

mastR 0.99.4

• Deleted *.Rproj file to stop git track.

mastR 0.99.5

• Updated R dependency, delete .Rhistory file, move all generic functions to a separate file “AllGenerics.R”.

mastR 0.99.6

• Removed paste in message().

mastR 0.99.7

• Improved test coverage depth, modified demo vignette and update Suggests packages.

mastR 0.99.8

• Linked external packages in vignette using BiocStyle functions, fixed the note of using paste in conditions.

mastR 0.99.9

• Updated vignette for BiocStyle packages link functions.

mastR 1.2.1

• Specify Matrix (<= 1.6.1.1) to avoid conflicts between SeuratObject and Matrix 1.6-2. Will fix to update to the latest version in BiocVersion 3.19.

mastR 1.3.1

• Remove Matrix version bound.

mastR 1.3.2

• Update function voom_fit_treat() to allow pass user-defined contrast matrix.

mastR 1.3.3

• Fix names mismatch problem when passing user-defined contrast matrix to DE analysis functions.

mastR 1.3.4

• Update function sig_gseaplot() to allow more custom arguments for enrichplot::gseaplot2().

mastR 1.3.5

• Update function remove_bg_exp() using Gaussian distribution percentiles to replace min-max scaling as relative exppression within each sample.

mastR 1.3.6

• Add bioRxiv citation for mastR package.

mastR 1.9.1

• Add Bioinformatics citation for mastR package, add sticker and remove BisqueRNA dependency.