All functions

cor.pairs()

Fast pairwise correlation estimation

dcAdjust()

Adjust for multiple testing in differential association analysis

dcEvaluate()

Evaluate performance of DC methods on simulations

dcMethods()

Get names of differential co-expression methods

dcNetwork()

Generate a differential network from a DC analysis

dcPipeline()

Run a DC pipeline on a simulation

dcScore()

Compute scores from differential association analysis

dcTest()

Statistical test for differential association analysis

dcZscore()

DC analysis using the z-score method

getSimData() getConditionNames() getTrueNetwork()

Get data and conditions from a given knock-down (KD)

mi.ap()

Mutual information using adaptive partitioning

perfMethods()

Get names of performance metric methods

performanceMeasure()

Performance metrics to evaluate classification

plotSimNetwork()

Plot source and true differential networks from simulations

sim102

Simulated expression data with knock-outs