Plot source and true differential networks from simulations

Source: R/simulation_plot.R

Plots either the source network or the true differential network for all KDs performed in the simulation. KD nodes are coloured with their resulting differential networks coloured accordingly.

plotSimNetwork(
  simulation,
  what = c("source", "direct", "influence", "association"),
  ...
)

Arguments

simulation

a list, storing data and results generated from simulations

what

a character, indicating which network to retrieve, 'source' (default), 'direct', 'influence' or 'association'

...

additional parameters to plot.igraph

Value

a plot of the network

Details

The direct, influence and association networks represent different levels of true differential networks. The direct network contains differential regulatory interactions present in the original network. The influence network includes upstream interactions and the association network includes non-causative differential interactions.

See also

plot.igraph

Examples

data(sim102)
plotSimNetwork(sim102)

plotSimNetwork(sim102, what = 'direct')

plotSimNetwork(sim102, what = 'influence')

plotSimNetwork(sim102, what = 'association')