Merge markers collected from different DB into one 'GeneSet' object, saved a
data.frame in json format under longDescription with 'TRUE' and '-' to
indicate which DB each gene is from, this can be shown via
jsonlite::fromJSON().
merge_markers(...)GeneSet or GeneSetCollection object to be merged
A GeneSet class of union genes in the given list
data("msigdb_gobp_nk")
Markers <- merge_markers(msigdb_gobp_nk[1:3])
jsonlite::fromJSON(GSEABase::longDescription(Markers))
#> Gene HP_ABNORMAL_NATURAL_KILLER_CELL_MORPHOLOGY
#> 1 AP3B1 TRUE
#> 2 CD70 TRUE
#> 3 DNMT3B TRUE
#> 4 GATA2 TRUE
#> 5 IKBKG -
#> 6 IL2RG TRUE
#> 7 JAK3 TRUE
#> 8 KNSTRN TRUE
#> 9 LYST TRUE
#> 10 NLRC4 TRUE
#> 11 PGM3 TRUE
#> 12 PIK3CD TRUE
#> 13 PRF1 -
#> 14 PRKCD -
#> 15 RAG1 TRUE
#> 16 RAG2 TRUE
#> 17 SH2D1A -
#> 18 SP110 TRUE
#> 19 STXBP2 -
#> 20 UNC13D -
#> 21 WIPF1 -
#> 22 XIAP -
#> HP_ABNORMAL_NATURAL_KILLER_CELL_PHYSIOLOGY
#> 1 TRUE
#> 2 -
#> 3 -
#> 4 -
#> 5 TRUE
#> 6 TRUE
#> 7 -
#> 8 -
#> 9 -
#> 10 TRUE
#> 11 -
#> 12 -
#> 13 TRUE
#> 14 TRUE
#> 15 -
#> 16 -
#> 17 TRUE
#> 18 -
#> 19 TRUE
#> 20 TRUE
#> 21 TRUE
#> 22 TRUE
#> HP_REDUCED_NATURAL_KILLER_CELL_COUNT
#> 1 TRUE
#> 2 TRUE
#> 3 TRUE
#> 4 -
#> 5 -
#> 6 TRUE
#> 7 -
#> 8 TRUE
#> 9 -
#> 10 TRUE
#> 11 TRUE
#> 12 TRUE
#> 13 -
#> 14 -
#> 15 -
#> 16 -
#> 17 -
#> 18 -
#> 19 -
#> 20 -
#> 21 -
#> 22 -