LM22 matrix for CIBERSORT.

Source: R/mastR-package.R

A dataset containing 547 marker genes expression of 22 immune subsets which is generated for CIBERSORT.

data(lm22)

Format

A data frame with 547 rows 23 variables:

Gene

gene symbols

B cells naive

0 or 1, represents if the gene is significantly up-regulated in the subset

B cells memory

0 or 1

Plasma cells

0 or 1

T cells CD8

0 or 1

T cells CD4 naive

0 or 1

T cells CD4 memory resting

0 or 1

T cells CD4 memory activated

0 or 1

T cells follicular helper

0 or 1

T cells regulatory (Tregs)

0 or 1

T cells gamma delta

0 or 1

NK cells resting

0 or 1

NK cells activated

0 or 1

Monocytes

0 or 1

Macrophages M0

0 or 1

Macrophages M1

0 or 1

Macrophages M2

0 or 1

Dendritic cells resting

0 or 1

Dendritic cells activated

0 or 1

Mast cells resting

0 or 1

Mast cells activated

0 or 1

Eosinophils

0 or 1

Neutrophils

0 or 1

Value

data frame