Extract immune subset markers from PanglaoDB website.

Source: R/get_panglao_sig.R

Extract specific immune subset markers for 'Hs' or 'Mm', the markers are retrieved from up-to-date PanglaoDB website.

get_panglao_sig(type, species = c("Hs", "Mm", "Mm Hs"))

Arguments

type

character vector, cell type name(s) of interest, available subsets could be listed by list_panglao_types()

species

character, default 'Hs', could be 'Hs', 'Mm' or 'Mm Hs', specify the species of interest

Value

a 'GeneSet' class object containing genes of given type(s)

Examples

get_panglao_sig(type = "NK cells")
#> setName: PanglaoDB 
#> geneIds: ITGAM, ITGAX, ..., CD8A (total: 80)
#> geneIdType: Symbol
#> collectionType: Null 
#> details: use 'details(object)'
get_panglao_sig(type = c("NK cells", "T cells"))
#> setName: PanglaoDB 
#> geneIds: ITGAM, ITGAX, ..., BRAF (total: 147)
#> geneIdType: Symbol
#> collectionType: Null 
#> details: use 'details(object)'