Plot Sample-wise QC plot
plotROIQC(
spe_object,
x_axis = "AOINucleiCount",
y_axis = "lib_size",
x_lab = "AOINucleiCount",
y_lab = "Library size",
x_threshold = NULL,
y_threshold = NULL,
regression_col = "purple",
hist_col = "black",
hist_fill = "white",
bin_num = 50,
threshold_col = "red",
threshold_linetype = "dashed",
layout_ncol = 2,
layout_nrow = 2,
leyout_height = c(0.8, 2.5),
layout_width = c(2.5, 0.8),
...
)Arguments
- spe_object
A SpatialExperiment object.
- x_axis
Numeric feature to plot as x axis.
- y_axis
Numeric feature to plot as y axis.
- x_lab
Label name for x axis.
- y_lab
Label name for y axis.
- x_threshold
Threshold to draw.
- y_threshold
Threshold to draw.
- regression_col
Color for the regression line.
- hist_col
Color for the histograms.
- hist_fill
Fill for the histograms.
- bin_num
Bin numbers for the histograms.
- threshold_col
Threshold line color.
- threshold_linetype
Threshold line type.
- layout_ncol
Column number layout.
- layout_nrow
Row number layout.
- leyout_height
Height layout.
- layout_width
Width layout.
- ...
aesthetic mappings to pass to
ggplot2::aes()of the dot plots.
Value
A ggplot object.
