• Added informative error messages. Improved edge case handling.
  • Added the adjusted rand index as a measure of gene-set overlap (now the default measure of overlap).
  • Added feature to only plot gene-sets that are marked in the plotMsigNetwork function.
  • Added function to identify and prioritise gene-set clusters (findMsigClusters)
  • Added weighting to text-mining analysis. Word clouds can now incorporate statistics.
  • Network plotting now performed using ggraph.
  • Removal of excessive warnings produced when performing text-mining.
  • Added PPI exploration of clusters
  • submitted to bioconductor